Table of Contents
Computational Biology and Ecology
Current Projects
Parsimonious Fish Stock Assessment
Work done April/May 2010
Work done September --- December 2010
Computational Biology and Ecology
Current Projects
Parsimonious Fish Stock Assessment
Background to Methodologies
Collaboration
Work done April/May 2010
Automatic Differentiation Model Builder (
ADMB
)
ADMB Synthetic Data
ADMB Real Data
ADMB Discussions
Hjelp med
wiki-syntaksen
Matlab/Octave Utilities
Work done September --- December 2010
Models estimating 0 year olds and older
Models with assumed exact catch data
Comparing the models with VPA estimates
Designing experiments: Choosing the number of cohorts per run
Monotonic survey data
Models with errors in the catch data
Model with latent variables
(
Obsolete
, see below instead)
Model estimating only 3 year olds and older
Models with assumed exact catch data
Choosing the number of cohorts per run
Monotonic survey data
(
NOTE
The plots in this section contain an error)
Models with errors in the catch data
Testing different levels of sigma for catch --- no variables locked
Testing of misfit as a function of catch standard deviations (q, s, M locked)
Testing the effect of fixing different variables
Various experiments
(Obsolete)
Model following all cohorts in any given year
Description of the model
Models with assumed exact catch data
Preliminary experiments
Models with errors in the catch data
TBD