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hovedside [2010/09/27 12:18] – lennartfrhovedside [2020/08/04 13:45] (current) – samuels
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-====== Admarwiki ======+====== Computational Biology and Ecology ====== 
 + 
 +===== Current Projects =====
  
 ===== Parsimonious Fish Stock Assessment ===== ===== Parsimonious Fish Stock Assessment =====
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   * [[mfiles:mfiles|Matlab/Octave Utilities]]   * [[mfiles:mfiles|Matlab/Octave Utilities]]
  
-==== Work done September/October 2010 ====+==== Work done September --- December 2010 ====
 === Models estimating 0 year olds and older === === Models estimating 0 year olds and older ===
 +== Models with assumed exact catch data == 
   * [[admb_real:sdreport_and_vpa|Comparing the models with VPA estimates]]   * [[admb_real:sdreport_and_vpa|Comparing the models with VPA estimates]]
   * [[admb_real:two_qs_cohorts_per_run|Designing experiments: Choosing the number of cohorts per run]]   * [[admb_real:two_qs_cohorts_per_run|Designing experiments: Choosing the number of cohorts per run]]
     * [[admb_real:monotonizing_surveys|Monotonic survey data]]     * [[admb_real:monotonizing_surveys|Monotonic survey data]]
-  * [[admb_real:uncertain_catch|Models with uncertainties in the catch data]] (**Obsolete**, see below instead)+== Models with errors in the catch data ==  
 +  * [[admb_real:uncertain_catch|Model with latent variables]] (**Obsolete**, see below instead)
  
 === Model estimating only 3 year olds and older=== === Model estimating only 3 year olds and older===
 +== Models with assumed exact catch data == 
  
   * [[admb_real:N3_cohorts_per_run|Choosing the number of cohorts per run]]   * [[admb_real:N3_cohorts_per_run|Choosing the number of cohorts per run]]
-    * [[admb_real:n3_cohorts_per_run_monotonic|Monotonic survey data]]+    * [[admb_real:n3_cohorts_per_run_monotonic|Monotonic survey data]] ( :!: **NOTE** The plots in this section contain an error) 
 +== Models with errors in the catch data ==  
 +  * [[admb_real:n3_re_catch:catch_sigma_levels:catch_sigma_levels|Testing different levels of sigma for catch --- no variables locked]] 
 +  * [[admb_real:n3_re_catch:misfit:misfit_testing|Testing of misfit as a function of catch standard deviations (q, s, M locked)]] 
 +  * [[admb_real:n3_re_catch:locking_variables:locking_tests|Testing the effect of fixing different variables]] 
 +  * [[admb_real:n3_re_catch:various_experiments|Various experiments]] **(Obsolete)** 
 + 
 +=== Model following all cohorts in any given year === 
 +[[admb_real:all_cohorts:model_description|Description of the model]] 
 +== Models with assumed exact catch data ==  
 +  * [[admb_real:all_cohorts:preliminary_experiments|Preliminary experiments]] 
 +== Models with errors in the catch data ==  
 +  * TBD 
hovedside.1285589881.txt.gz · Last modified: 2010/09/27 12:18 by lennartfr